HsaALTD0000155-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133430032-133432692:+
Coord C1 exon
chr9:133430032-133430101
Coord A exon
NA
Coord C2 exon
chr9:133432588-133432692
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCACCTGTCCACCCTCCTAGGAT
3' ss Score
9.19
Exon sequences
Seq C1 exon
CGCCAACGAGCAGTGCCGCGTGGCCTTCGGCCCCAAGGCTGTCGCCTGCACCTTCGCCAGGGAGCACCTG
Seq A exon
NA
Seq C2 exon
GATATGTGCCAGGCCCTCTCCTGCCACACAGACCCGCTGGACCAAAGCAGCTGCAGCCGCCTCCTCGTTCCTCTCCTGGATGGGACAGAATGTGGCGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323-15-15,16-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=20.0)
A:
NA
C2:
PF135821=Reprolysin_3=PD(3.3=11.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGCCTGCACCTTCG
R:
CTTCTCCACGCCACATTCTGT
Band lengths:
137-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains