HsaEX0002432 @ hg38
Exon Skipping
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133426199-133448728:+
Coord C1 exon
chr9:133426199-133426345
Coord A exon
chr9:133436829-133436955
Coord C2 exon
chr9:133448599-133448728
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCTCCTCCTGGCCAGGCC
3' ss Score
7.35
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTTTGACCTGGAGTTGCCTGATGGTAACCGGCAGGTGCGGGGCGTCACCCAGCTGGGCGGTGCCTGCTCCCCAACCTGGAGCTGCCTCATTACCGAGGACACTGGCTTCGACCTGGGAGTCACCATTGCCCATGAGATTGGGCACAG
Seq A exon
GCCTGCGAGAAGACCCAGCTGGAGTTCATGTCGCAACAGTGCGCCAGGACCGACGGCCAGCCGCTGCGCTCCTCCCCTGGCGGCGCCTCCTTCTACCACTGGGGTGCTGCTGTACCACACAGCCAAG
Seq C2 exon
GTCTGATGGAGCTGCGTTTCCTGTGCATGGACTCTGCCCTCAGGGTGCCTGTCCAGGAAGAGCTGTGTGGCCTGGCAAGCAAGCCTGGGAGCCGGCGGGAGGTCTGCCAGGCTGTCCCGTGCCCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323_MULTIEX2-6/22=C1-16
Average complexity
C3
Mappability confidence:
95%=100=95%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=FE(40.5=100)
A:
PF0009014=TSP_1=PD(1.9=2.3)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAGTTGCCTGATGGTA
R:
GACAGCCTGGCAGACCTCC
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development