HsaEX0002423 @ hg38
Exon Skipping
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133426199-133432692:+
Coord C1 exon
chr9:133426199-133426345
Coord A exon
chr9:133428634-133428771
Coord C2 exon
chr9:133432588-133432692
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACTCCCCGCCCCCCGACCAGCTT
3' ss Score
5.13
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
Exon sequences
Seq C1 exon
GTTTGACCTGGAGTTGCCTGATGGTAACCGGCAGGTGCGGGGCGTCACCCAGCTGGGCGGTGCCTGCTCCCCAACCTGGAGCTGCCTCATTACCGAGGACACTGGCTTCGACCTGGGAGTCACCATTGCCCATGAGATTGGGCACAG
Seq A exon
CTTCGGCCTGGAGCACGACGGCGCGCCCGGCAGCGGCTGCGGCCCCAGCGGACACGTGATGGCTTCGGACGGCGCCGCGCCCCGCGCCGGCCTCGCCTGGTCCCCCTGCAGCCGCCGGCAGCTGCTGAGCCTGCTCAG
Seq C2 exon
GATATGTGCCAGGCCCTCTCCTGCCACACAGACCCGCTGGACCAAAGCAGCTGCAGCCGCCTCCTCGTTCCTCTCCTGGATGGGACAGAATGTGGCGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323_MULTIEX2-1/22=C1-3
Average complexity
C2*
Mappability confidence:
96%=100=96%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.272 C2=0.121
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=FE(40.5=100)
A:
PF0142114=Reprolysin=FE(22.3=100)
C2:
PF135821=Reprolysin_3=PD(3.3=11.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGACCTGGAGTTGCCTGA
R:
GCCACATTCTGTCCCATCCAG
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development