RnoEX6016059 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5526089-5535957:+
Coord C1 exon
chr3:5526089-5526235
Coord A exon
chr3:5535236-5535382
Coord C2 exon
chr3:5535795-5535957
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGACTTTCTTCTGCCCACAGCTT
3' ss Score
8.39
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTTGACCTGGAGCTGCCGGATGGTAACCAGCAGGTTCGGGGAGTCACCCAACAGGGTGGTGCCTGCTCTCCTTCCTGGAGTTGCCTTATCACTGAGGACACTGGCTTCGATCTGGGGGTCACCATTGCCCACGAGATTGGACACAG
Seq A exon
CTTTGGGCTGGACCATGATGGTGCTCCAGGCAGTGGCAGCACCTGCGAGGCCCGTGGCCATGTGATGGCATCTGACGGCGCAGTGCCTGCTGGAGGGGCCCTGGAGTGGTCCACCTGCAGCCAAAGGCAGCTGCAGCACCTGCTCAG
Seq C2 exon
CACAGGGCAAATGCACTGCCTCTGGGACCCGCCCGGGCTGCAGTCAGGACTCACATGGCACCAGCTGGTGGCACAGCCTGGCCTCTTCTACAGTGCAGATGACCAGTGCCGTGTGGCTTTCGGCGCCGGGGCTGTCGCCTGCACCTTCTCCAGGGAGGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'7-7,'7-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=FE(39.5=100)
A:
PF0142114=Reprolysin=FE(23.4=100)
C2:
PF0142114=Reprolysin=PD(5.3=20.0)
Main Skipping Isoform:
ENSRNOT00000007640fB618
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGACCTGGAGCTGCCG
R:
TCTGCACTGTAGAAGAGGCCA
Band lengths:
246-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]