GgaEX7009817 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6910264-6911554:+
Coord C1 exon
chr17:6910264-6910410
Coord A exon
chr17:6910719-6910853
Coord C2 exon
chr17:6911404-6911554
Length
135 bp
Sequences
Splice sites
3' ss Seq
CAGTGCTTTTTCTGTTACAGTCT
3' ss Score
8.13
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTGACCTGCAGTTACCCGATGGGAACAAGGAGCTACGTGGAGTGACTCGGTTAGGTGGGGTCTGCTCCTCCTCCTGGAGCTGTGTTATTACCCAGGACACTGGCTTTGACTTGGGAGTCACCATAGCCCATGAGATTGGGCACAG
Seq A exon
TCTTGGCATCCCCCATGATGGTGAGGGGAATCAGTGCAGCAGCAGTGGTTTCATCATGGGCTCAGCAGGAAACCGTAATAGTGTTGACCTCATCTGGTCACAGTGTAGCCGAGAAGAATTCTTGGCCTTTGTCAG
Seq C2 exon
CACAGGCCAAACAAACTGCTTAAATGACCTGCCGGACATGGACGGCAGCATCCCTGGATGGAAGCCTGGCTTGTACTATGGAGCAGATGAGCAATGTAAAATAGCCTTTGGGAGCGTTGCAACTGCGTGCACCTTTGCTGACAGCAATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'7-10,'7-9,8-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(23.8=100)
A:
PF0142114=Reprolysin=FE(21.8=100)
C2:
PF0142114=Reprolysin=PD(5.3=21.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAAGGAGCTACGTGGAG
R:
GCAACGCTCCCAAAGGCTATT
Band lengths:
244-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]