BtaEX6047323 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104382822-104385788:+
Coord C1 exon
chr11:104382822-104382968
Coord A exon
chr11:104385201-104385347
Coord C2 exon
chr11:104385626-104385788
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGAGCCGCCTCCTCCGCAGCTT
3' ss Score
4.44
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTTTGACCTGGAATTGCCCGATGGTAACCGGCAGGTTCGGGGGGTCACCCAGCTGGGGGGCGCCTGCTCCTCCTCCTGGAGCTGCCTTATCACTGAGGATACTGGCTTTGACCTGGGGCTCACCATCGCCCATGAGATTGGGCACAG
Seq A exon
CTTCGGCCTGGAGCACGATGGCGTGCCGGGCAGCGGCTGCGGGCCCAGCGGCCACGTGATGGCCTCGGACGGCGCGGCGCCCGCCCTCGCCCTCGGGGGCCCGGCGTGGTCCCCCTGCAGCCGCCGGCAGCTGCTGAGTCTGCTCAG
Seq C2 exon
CGCAGGACGGGCGCGCTGCTTGTGGGACCCTCCGGGGCCGCTGTCCGGGCCCGCGGGGCAGCCTCCCGAGGTGCAGCCCGGCCTCTACTACGGCGCAGACGAGCAGTGCCGCGTCGCCTTCGGCCCCACGGCGGTCGCCTGCACCTTCCGCGGGGAGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'7-10,'7-9,8-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.160 C2=0.200
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(23.6=100)
A:
PF0142114=Reprolysin=FE(23.6=100)
C2:
PF0142114=Reprolysin=PD(5.3=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCTGGAATTGCCCGATG
R:
CTCGTCTGCGCCGTAGTAGAG
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]