BtaEX0002426 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104387690-104390815:+
Coord C1 exon
chr11:104387690-104387753
Coord A exon
chr11:104390080-104390209
Coord C2 exon
chr11:104390667-104390815
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTCCACCTCCTCCATCCAGGCC
3' ss Score
9.69
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACCTGCCTTTGGGGGGCGCACGTGCGTAGGTTCGGACCTGCAGGCCGAGATGTGCAACACCCAG
Seq A exon
GCCTGCGAGAAGACCCAGCTGGAGTTCATGTCTGAGCAGTGTGCGCAGACGGACAGCGAGCCCCTGCGCCTCTCCCCAGGGGGCAGCACCGCCTTCTACCGCTGGGGGACCGCAGAGCAGTACAGCGAAG
Seq C2 exon
GGAACGCCCTGTGCAGACACGTGTGCCGGGCCGTCGGCGAGAGTTTCATGGTGCGGCGTGGGGACCGTTTCCTGGACGGCACGCGCTGTGTGCCGGGCGACCCTCAGGAGGACGGGGCCCTGAGGCTGTGCGTGTCAGGCAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'12-19,'12-18,13-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.2=100)
A:
PF0009014=TSP_1=PD(2.0=2.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGCGTAGGTTCGGAC
R:
CCTGCAGCTGCCTGACAC
Band lengths:
195-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development