GgaEX7009813 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6913012-6914062:+
Coord C1 exon
chr17:6913012-6913075
Coord A exon
chr17:6913567-6913693
Coord C2 exon
chr17:6913917-6914062
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAATTCTCTCTGGGATGTAGGCC
3' ss Score
4.19
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCCTGCTTTTGGAGGGAAGGAATGCCAGGGTGCCAGCATTCAAGCAGAGATGTGCAATACTCAG
Seq A exon
GCCTGTCTGATGACCCAGCTTGACTTTATGGCTGAACAGTGTGCAGCAACAAATTTAAAGCCACTGTATCTCACTGTAGGAGTGCCATCCTTTTACACCTGGACTTCTGCTGTTGGCTTTGCCAAAG
Seq C2 exon
GGGACACGCAGTGCAAGCACATGTGCAGGACCATTGAGGATGAATTCATGGTAAGCCGTGAGGACAGTTTCATAGATGGAACCAGATGTGAGCCTGATAACTCTGAAGATGGGACTTTCCATCTGTGTGTAGCGGGAAGCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'14-17,'14-15,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.2=100)
A:
PF0009014=TSP_1=PD(2.0=2.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTTTGGAGGGAAGGAATG
R:
GCTTCCCGCTACACACAGATG
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]