RnoEX6016054 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5538311-5541938:+
Coord C1 exon
chr3:5538311-5538374
Coord A exon
chr3:5540603-5540729
Coord C2 exon
chr3:5541790-5541938
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCCTCCCCTGGCCAGGCT
3' ss Score
8.17
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCTGCATTTGGGGGACGTGCATGTGTGGGCGAGGACCTCCAGGCTAAGATGTGCAACACGCAG
Seq A exon
GCTTGTGAGAAGACTCAGCTGGAGTTCATGTCAGAGCAGTGTGCCCAGACAGACAGACATCCACTGCAACTTTCCCAAGGCAGTGCCTCCTTCTACCACTGGGATGCTGCTGTGCAGTATAGTCAAG
Seq C2 exon
GGGATACTCTGTGCAGACACATGTGCTGGGCTGTTGGAGAAAGTTTCATTGTCAGCCGTGGGGACAGTTTCCTCGATGGGACCCGTTGTGTGCCAAATGGTCCTCGGGAGGATGGGACCGTGAGCCTCTGTTTGTTGGGTAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.2=100)
A:
PF0009014=TSP_1=PD(2.0=2.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCATTTGGGGGACGTG
R:
CCTGCAGCTACCCAACAAACA
Band lengths:
212-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]