HsaALTD0000747-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000137948 | BRDT
Description
bromodomain testis associated [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr1:91949388-91949682:+
Coord C1 exon
chr1:91949388-91949488
Coord A exon
NA
Coord C2 exon
chr1:91949638-91949682
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
3' ss Seq
CCATCAACATCGTGCGACAGTCC
3' ss Score
2.74
Exon sequences
Seq C1 exon
CGCGACCGCCATTACAACAAAAACTGGCGGCGAGGAACTGCGGAGAACTGTTGCCCTGCACCGCTTCATTTTGTGCAGCCTGAAAGGGGCAATCACATAAG
Seq A exon
NA
Seq C2 exon
TCCGGGCAGTTGAGAAGGCCACCCCGCTTCGTGCCTGCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAACAAAAACTGGCGGCGA
R:
GGTGGCCTTCTCAACTGCC
Band lengths:
112-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development