HsaEX1005855 @ hg38
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain testis associated [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr1:91949371-91962946:+
Coord C1 exon
chr1:91949371-91949488
Coord A exon
chr1:91949638-91949682
Coord C2 exon
chr1:91962718-91962946
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCATCAACATCGTGCGACAGTCC
3' ss Score
2.74
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TATAAAAGCGCCTGTCGCGCGACCGCCATTACAACAAAAACTGGCGGCGAGGAACTGCGGAGAACTGTTGCCCTGCACCGCTTCATTTTGTGCAGCCTGAAAGGGGCAATCACATAAG
Seq A exon
TCCGGGCAGTTGAGAAGGCCACCCCGCTTCGTGCCTGCAGCCCAG
Seq C2 exon
GACATGTACTTGTAGACAGGATTCAAAGCAGTTAAGAATGTCTCTGCCAAGTCGACAAACAGCTATTATTGTTAACCCTCCTCCACCAGAATATATAAATACTAAGAAAAATGGGCGATTGACAAATCAACTTCAGTATCTACAAAAAGTTGTCCTAAAGGATTTATGGAAGCATAGTTTTTCATGGCCCTTTCAACGTCCTGTGGATGCTGTGAAACTACAGTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948_MULTIEX1-1/22=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.069
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(32.6=43.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGCGGAGAACTGTTG
R:
GCTGTTTGTCGACTTGGCAGA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains