HsaEX0008446 @ hg38
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain testis associated [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr1:91949371-91962946:+
Coord C1 exon
chr1:91949371-91949682
Coord A exon
chr1:91949890-91949958
Coord C2 exon
chr1:91962718-91962946
Length
69 bp
Sequences
Splice sites
3' ss Seq
AATACTCATGGTCTTTGTAGTTC
3' ss Score
4.57
5' ss Seq
AAAGTACGG
5' ss Score
4.86
Exon sequences
Seq C1 exon
TATAAAAGCGCCTGTCGCGCGACCGCCATTACAACAAAAACTGGCGGCGAGGAACTGCGGAGAACTGTTGCCCTGCACCGCTTCATTTTGTGCAGCCTGAAAGGGGCAATCACATAAGGTCGGTTTTGTAATATACAGGTAACATACAGGTAATGTACCCTCCACAGGGGGTGCTGCCTTAGGCCGGCCCCGAGGTGCGGCCTTGGGTGGGAACAACCGTTTTTTCCCCCCTCTCCCCTCCCCGACCCCATCAACATCGTGCGACAGTCCGGGCAGTTGAGAAGGCCACCCCGCTTCGTGCCTGCAGCCCAG
Seq A exon
TTCCTCTTAGGTCTTGGACTGGTGTGGATCGCTGCTGCCTGTACTGTAATTTTGGAAATGCAGGAGAAA
Seq C2 exon
GACATGTACTTGTAGACAGGATTCAAAGCAGTTAAGAATGTCTCTGCCAAGTCGACAAACAGCTATTATTGTTAACCCTCCTCCACCAGAATATATAAATACTAAGAAAAATGGGCGATTGACAAATCAACTTCAGTATCTACAAAAAGTTGTCCTAAAGGATTTATGGAAGCATAGTTTTTCATGGCCCTTTCAACGTCCTGTGGATGCTGTGAAACTACAGTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948_MULTIEX1-2/22=1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.069
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(32.6=43.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCGACCCCATCAACATC
R:
ATTCTGGTGGAGGAGGGTTAACA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development