HsaEX1005857 @ hg38
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain testis associated [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr1:91949890-91964764:+
Coord C1 exon
chr1:91949890-91949958
Coord A exon
chr1:91962718-91962946
Coord C2 exon
chr1:91964627-91964764
Length
229 bp
Sequences
Splice sites
3' ss Seq
ACTCAGTTTTTGTTTTTCAGGAC
3' ss Score
9.34
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
TTCCTCTTAGGTCTTGGACTGGTGTGGATCGCTGCTGCCTGTACTGTAATTTTGGAAATGCAGGAGAAA
Seq A exon
GACATGTACTTGTAGACAGGATTCAAAGCAGTTAAGAATGTCTCTGCCAAGTCGACAAACAGCTATTATTGTTAACCCTCCTCCACCAGAATATATAAATACTAAGAAAAATGGGCGATTGACAAATCAACTTCAGTATCTACAAAAAGTTGTCCTAAAGGATTTATGGAAGCATAGTTTTTCATGGCCCTTTCAACGTCCTGTGGATGCTGTGAAACTACAGTTGCCT
Seq C2 exon
GATTATTATACCATTATAAAAAACCCAATGGATTTAAATACAATTAAGAAGCGCTTGGAGAATAAATATTATGCGAAGGCTTCAGAATGTATAGAAGACTTCAATACAATGTTCTCAAATTGTTATTTATATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948-'3-13,'3-10,19-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(32.6=43.8)
C2:
PF0043920=Bromodomain=PU(75.0=97.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTCTTGGACTGGTGTGGA
R:
TTGAGAACATTGTATTGAAGTCTTCT
Band lengths:
180-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains