RnoEX0015169 @ rn6
Exon Skipping
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3444136-3447380:-
Coord C1 exon
chr14:3447241-3447380
Coord A exon
chr14:3446423-3446662
Coord C2 exon
chr14:3444136-3444273
Length
240 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTCAGGAC
3' ss Score
13.3
5' ss Seq
CCTGTGAGC
5' ss Score
3.28
Exon sequences
Seq C1 exon
GAATTTGTAGACTTCCTGCTAAGGCCTCAATTTGTATTTTTGAAGAACAGAAAGAAATTCTGTGAAGTGTTGAAACCATTTAAACCATCTAAGACCAAGACATACCTACTGAAACAATGCACAGTATTTGTGTAAAAAAG
Seq A exon
GACATATTCTCGTAGACACCTTGAAGATACCAGGATCTGAAGTAGTTGAGAATGTCTCTGCCAAGTCGACAAATGGCTATTGTTAACCCCCCTCCACCAGAGTACATAAATGCTAAGAAAACTGGGCGGTTGACCAACCAGCTGCAGTTCCTGCAGAGAGTCGTCCTGAAGGCGCTGTGGAAACACAGTTTCTCCTGGCCGTTTCAACAGCCTGTGGATGCCGCGAAGCTCAAGCTGCCT
Seq C2 exon
GACTATTACACCATCATAGAGACGCCAATGGATTTAAGTACAATTAAGAAGCGGCTGGAAAACAGGTACTACGAGAAGGCTTCCGAATGCGTGGGAGACTTCAACACGATGTTCTCAAACTGCTACTTATACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073-'4-3,'4-1,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(32.6=44.4)
C2:
PF0043920=Bromodomain=FE(52.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTAGACTTCCTGCTAAGGCC
R:
CTTGTTGTATAAGTAGCAGTTTGAGA
Band lengths:
276-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]