GgaEX1011241 @ galGal4
Exon Skipping
Gene
ENSGALG00000006031 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr8:13258348-13266261:-
Coord C1 exon
chr8:13266161-13266261
Coord A exon
chr8:13259323-13259545
Coord C2 exon
chr8:13258348-13258485
Length
223 bp
Sequences
Splice sites
3' ss Seq
AGTACTTTTCCTCCCTTCAGGTT
3' ss Score
10.89
5' ss Seq
CCTGTAAGA
5' ss Score
4.07
Exon sequences
Seq C1 exon
TTCGGAGTGATGGCATTTGTCTTCCTGAGACACTGTTACATGTGATGAGCCCTGCTTTCCTGGAAGTATCTGAACACCTGCCTGCTGATGGGAAGTAGCAG
Seq A exon
GTTAGGTGTGTAATGAAGATCTTGGAACAAGATGTCTCTCCCAAGCCTGCGTCGTTCTCTTATTACTAACCCTCCTCCACCAGAATATATAAACAACAGAAATAGTGGGTGTCAAACAAACCAACTTCAGTACTTACAGAGAGTGGTCATGAAAGCCATGTGGCGACACAACTTTTCCTGGCCGTTTCATCAGCCTGTAGATGCAGCAGCACTGAATCTTCCT
Seq C2 exon
GATTACTACAGTATTATAAAGAAACCTATGGACCTGAGCACAATTAAAAAGCGTCTGGAACATAATTACTACACAAAATCTGCAGAATGCATTGATGACTTCAAAACTATGTTCTTGAACTGCTACATATATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(32.6=43.8)
C2:
PF0043920=Bromodomain=FE(52.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAGTGATGGCATTTGTCT
R:
ATGTAGCAGTTCAAGAACATAGTTT
Band lengths:
228-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]