DreEX6021795 @ danRer10
Exon Skipping
Gene
ENSDARG00000102802 | brdt
Description
bromodomain, testis-specific [Source:ZFIN;Acc:ZDB-GENE-030131-5928]
Coordinates
chr6:24289942-24292617:-
Coord C1 exon
chr6:24292334-24292617
Coord A exon
chr6:24290223-24290522
Coord C2 exon
chr6:24289942-24290079
Length
300 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCTCCCTGTTTACAGTGG
3' ss Score
9.3
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATACCAGGCGGTTGCCGTGAGAGACGTCCGCCATTGATGACTAACCTTTCACAGAAACAAGAGTTATTTCAAACGTATACATGTTTATGGTGTTAATTTGGTCTGCTGGCTAAGAAGGCTTAGCTTAAAATCTTTAAATCGTTTTTCAGAGAGGTTTTTTTCGGGCTCAAAACATCAACAAGATCCTTCGGTTGGTGAAGTTTTCCAGCTGAGCTCCTTCTGCACTGCAGCGTCTGTCTCAGTTCGGCCGTTTAAACTTTCTTTGTTGTGCTCGAGACGGAAAG
Seq A exon
TGGCACAGACAGTGGATCTGTAATGCTCGCTGAGCTGCCTAGGTGTAGCGGCGAAAACCCTTTTCACACCGATCAGCATCACTCCCAGGATCAGCTCAGGCTATGTCTGATGTGAAACCCCCACAGCATTTCACCATGAATGGGAATCCCCCTCCCCCAGAGTTCAAGAACCCCAAAAAGCCTGGCCGCCTCACCAATCATTTGCAATATATAGAAAAAGTGGTGATTAGGGCCCTGTGGAAACATCATTTCTCCTGGCCATTCAGACAGCCAGTGGATGCGGTCAGACTCAATTTGCCA
Seq C2 exon
GATTATTATACAATCATCAAAAACCCAATGGATTTGACCACCATTAGAAAGCGTCTTGAGAACAATTACTACTGGAAAGCGATGGAGTGTGTTGAAGACTTTAACACCATGTTTACAAATTGTTATGTCTACAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102802-'5-4,'5-1,7-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(32.6=42.4)
C2:
PF0043920=Bromodomain=FE(52.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACGTCCGCCATTGATG
R:
CACACTCCATCGCTTTCCAGT
Band lengths:
357-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]