GgaEX1011189 @ galGal4
Exon Skipping
Gene
ENSGALG00000002682 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr17:7173128-7189561:-
Coord C1 exon
chr17:7189307-7189561
Coord A exon
chr17:7175373-7175689
Coord C2 exon
chr17:7173128-7173265
Length
317 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTCACTTGCTTTAGGTT
3' ss Score
10.84
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCGTGCCCGCAGCAGCCGGGGAGCGGAGCGGGGCCGGAGCGCGGTGGGACGCGGCGGCTCCTGGGAGCTGTAGTCCGGGCCCCGCCGCCGCCTCCCGCCCGGCCCGGCCCGGCACTACGGGCCCCACACGGCCCCGCGGCCGGCGCATGAGCCGTCGGCCGCTTTAGCGCATCTATTCTGCTGCCTTGCCGAGGATAAAAAGAAGAGCAACTGGAGGGACTATAAGGCAAACGTTGCTGGAGCTGCCGGGGCAAA
Seq A exon
GTTGCATGGTTGGACCCTGGAAATGGGATGTCAGTCCCATTCAGGGAGCATAAAGGAAGAAGGAGAATCTCCCAGTTGCTGCTGCTGTGACAGCGAGTGAGAGCACGAGCAGGAAGATGTCGACAGTCACTTCAGCAATTCAGGCTCCTCAGGGCCCTGTGAATCCACCACCTCCGGAGGTCACTAATCCTAATAAGCCTGGCCGGAAGACCAACCAATTGCAATATATGCAAAATGTTGTTGTAAAGACCTTATGGAAGCATCAGTTTGCTTGGCCTTTCTACCAACCTGTTGATGCAATTAAATTGAATTTACCG
Seq C2 exon
GATTATCACAAAATAATAAAAAACCCCATGGACATGGGGACTATCAAGAAACGCCTGGAACATAACTATTACTGGAGTGCCAGTGAATGTATGCAGGATTTCAACACCATGTTTACAAATTGTTATATTTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682-'1-2,'1-1,7-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.448 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(33.3=43.3)
C2:
PF0043920=Bromodomain=FE(51.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGGAGCTGTAGTCCG
R:
ATTTGTAAACATGGTGTTGAAATCCT
Band lengths:
318-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]