DreEX0017291 @ danRer10
Exon Skipping
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18235967-18238701:-
Coord C1 exon
chr21:18238537-18238701
Coord A exon
chr21:18236568-18236923
Coord C2 exon
chr21:18235967-18236104
Length
356 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTGTTTTTTTTTTAGAGG
3' ss Score
9.26
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
AGATTGAGAACTTGTGGTTTAATGCTGAACAGCAGATGGTTGAGCGCGCCAATGCGCATGCGCACAGCACTTCGCGTACCTCATCTCTGTGCTCCTGCCCAGCCTCCAAACAAGCGACGAGCCACTGGGATTGCCACACGGTAACTCCTTTCCTGAAGCCTTTGA
Seq A exon
AGGTTGAAGGTTGGGTCCTGCAATGGGATATGGTCCCTCTCAGATGACTGAAGAGCTAAAAAAACAGAAAAGCATAAAAAAGGCACTCTGAAAATAAGTCTTTTGCAGAATAAAAAAACCTTTCCCATTAAGCAGTTTTTCCCCTCTTCACCAAAATGTCAGCTGTCACTTCCGCAACCCCAGAACCTCCTGCAGCCGCAAACCCTCCTCCTCCAGAGGTGATCAACCCTACCAAACCTGGCCGCAAGACTAACCAATTGCAGTACATGCAAAATGTTGTTGTCAAGACGCTGTGGAAGCACCAGTTTGCATGGCCATTTTACCAGCCAGTTGATGCTGTTAAGCTTGGCCTTCCG
Seq C2 exon
GATTATCACAAGATCATAAAGAACCCAATGGATATGGGCACCATCAAGAAAAGACTGGAGAGCGTTTACTACTACAGTGCAAGCGAGTGTATGCAGGATTTCAACACAATGTTCACAAACTGTTATATTTACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527-'0-2,'0-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.448 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(33.3=43.3)
C2:
PF0043920=Bromodomain=FE(51.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAACTTGTGGTTTAATGCTGA
R:
AACAGTTTGTGAACATTGTGTTGA
Band lengths:
286-642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]