MmuEX6099881 @ mm9
Exon Skipping
Gene
ENSMUSG00000026918 | Brd3
Description
bromodomain containing 3 [Source:MGI Symbol;Acc:MGI:1914632]
Coordinates
chr2:27318975-27331206:-
Coord C1 exon
chr2:27331097-27331206
Coord A exon
chr2:27319409-27319713
Coord C2 exon
chr2:27318975-27319112
Length
305 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGCTTTCTTCTGCAGGTG
3' ss Score
13.74
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATGAGCCCTGTACAGCTCCGGCGCGTCTATTATGCTGCCGGGGCCGGCGAGCCAAAGAGGAGCCGGCCGCGCGGGCCGGGAGCAGACGGCGCTGGAGCCGCCTAGGCCAA
Seq A exon
GTGCCTGATTGGGCCCAGAAATGGGATGCCAAGCCTCCACGAGGAGCGCCTCTTTGAGCTGCTGCTGTGACAGCAAGTGACTAAGCTGCCAGAGGATGTCCACTACAGCGGCTGCCCCCACGGGGATCCCGGCAGTCCCGGGCCCCGTGAACCCTCCCCCACCTGAGGTCTCCAACCCCAGCAAGCCCGGGCGAAAGACTAACCAACTGCAGTACATGCAGAATGTAGTGGTGAAGACACTCTGGAAACATCAGTTTGCCTGGCCTTTCTACCAGCCTGTGGATGCAATCAAGCTGAACCTGCCT
Seq C2 exon
GATTATCATAAAATAATAAAAAACCCAATGGACATGGGGACTATCAAGAAGAGACTAGAAAATAATTATTATTGGAGTGCCAGTGAGTGTATGCAGGACTTCAACACCATGTTTACAAACTGTTATATTTATAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026918-'1-11,'1-9,11-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.444 C2=0.004
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(33.3=41.4)
C2:
PF0043920=Bromodomain=FE(51.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGTACAGCTCCGG
R:
ACAGTTTGTAAACATGGTGTTGA
Band lengths:
230-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: