HsaEX6063820 @ hg19
Exon Skipping
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:1104]
Coordinates
chr9:136917428-136933139:-
Coord C1 exon
chr9:136933067-136933139
Coord A exon
chr9:136918387-136918712
Coord C2 exon
chr9:136917428-136917565
Length
326 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTTCCTCCTCTGCAGCTG
3' ss Score
10.43
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
Exon sequences
Seq C1 exon
CCGGGGCCGGCGAGCCAAAGAGGAGCCGGCCGCGCGGGCCGGGAGGGGACGGCCGCCGGAGCCGCGAGGCCAA
Seq A exon
CTGTCGCCTGGTTGGGCCCGGAAATGGGACGTCGCGCTTTCTCAGGGAGCGTAGAAGCAGCCAGGGCCTCTCCAAGCCGCTGCTGTGACAGAAAGTGAGTGAGCTGCCGGAGGATGTCCACCGCCACGACAGTCGCCCCCGCGGGGATCCCGGCGACCCCGGGCCCTGTGAACCCACCCCCCCCGGAGGTCTCCAACCCCAGCAAGCCCGGCCGCAAGACCAACCAGCTGCAGTACATGCAGAATGTGGTGGTGAAGACGCTCTGGAAACACCAGTTCGCCTGGCCCTTCTACCAGCCCGTGGACGCAATCAAATTGAACCTGCCG
Seq C2 exon
GATTATCATAAAATAATTAAAAACCCAATGGATATGGGGACTATTAAGAAGAGACTAGAAAATAATTATTATTGGAGTGCAAGCGAATGTATGCAGGACTTCAACACCATGTTTACAAATTGTTACATTTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925-'1-5,'1-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.470 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(33.3=40.8)
C2:
PF0043920=Bromodomain=FE(51.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCGAGCCAAAGAGGA
R:
ACAATTTGTAAACATGGTGTTGAAGT
Band lengths:
190-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)