GgaEX1011189 @ galGal3
Exon Skipping
Gene
ENSGALG00000002682 | BRD3
Description
NA
Coordinates
chr17:7855426-7871805:-
Coord C1 exon
chr17:7871608-7871805
Coord A exon
chr17:7857671-7857987
Coord C2 exon
chr17:7855426-7855563
Length
317 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTCACTTGCTTTAGGTT
3' ss Score
10.84
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CTCCTGGGAGCTGTAGTCCGGGCCCCGCCGCCGCCTCCCGCCCGGCCCGGCCCGGCACTACGGGCCCCACACGGCCCCGCGGCCGGCGCATGAGCCGTCGGCCGCTTTAGCGCATCTATTCTGCTGCCTTGCCGAGGATAAAAAGAAGAGCAACTGGAGGGACTATAAGGCAAACGTTGCTGGAGCTGCCGGGGCAAA
Seq A exon
GTTGCATGGTTGGACCCTGGAAATGGGATGTCAGTCCCATTCAGGGAGCATAAAGGAAGAAGGAGAATCTCCCAGTTGCTGCTGCTGTGACAGCGAGTGAGAGCACGAGCAGGAAGATGTCGACAGTCACTTCAGCAATTCAGGCTCCTCAGGGCCCTGTGAATCCACCACCTCCGGAGGTCACTAATCCTAATAAGCCTGGCCGGAAGACCAACCAATTGCAATATATGCAAAATGTTGTTGTAAAGACCTTATGGAAGCATCAGTTTGCTTGGCCTTTCTACCAACCTGTTGATGCAATTAAATTGAATTTACCG
Seq C2 exon
GATTATCACAAAATAATAAAAAACCCCATGGACATGGGGACTATCAAGAAACGCCTGGAACATAACTATTACTGGAGTGCCAGTGAATGTATGCAGGATTTCAACACCATGTTTACAAATTGTTATATTTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682-'1-2,'1-1,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.448 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(33.3=43.3)
C2:
PF0043920=Bromodomain=FE(51.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGGAGCTGTAGTCCG
R:
ATTTGTAAACATGGTGTTGAAATCCT
Band lengths:
318-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]