MmuEX6077040 @ mm9
Exon Skipping
Gene
ENSMUSG00000024335 | Brd2
Description
bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]
Coordinates
chr17:34253143-34256845:-
Coord C1 exon
chr17:34255551-34256845
Coord A exon
chr17:34253853-34254156
Coord C2 exon
chr17:34253143-34253280
Length
304 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCCCCTTTTTGCAGGCT
3' ss Score
11.13
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CCCTCTACTCCGCCCTCAAGAGGATTTCAAAGATGGAGGCGGCGGCTCTCTGAAACCCCTTTTTGGTGCTCATCCGCCTCCATCGGAGGTCTGACGCGGCTCTCGTGACCCCCCGGCGACCGCGGCGGGAAGAGGGGACCCCTGTCCACCGGCGGCAGGCCGAATTGACGACGGTGTCCAGTTTCGGGGACTGCCGGGTTTGCAGACTGCGTTCTCCTGTGGCTCGCCGGCCGGCAGAGGCCGCCGCCATTTTCCTGCTGTCGCCGCCTGCGGAGCGTGCAAAGCTGCCGGAGTTGCGGGGAGGACGGCGCAGGAGACAGCGTTCCCGCCGGTCCCGCAACGAGGCTGACGCCTGGAGGGCCAAGGGCAGCGGCCTTCCCCCCACTTCCCGGGTTATGCTGGGCCCGGCGGTGAGGGGAGCCGAGGCTACCCGGACTTCACGCAGCTGAGCGGCGGCGGTTCCCTGAGGTCAAGATGCTGCAAAACGTGACTCCCCACAA
Seq A exon
GCTCCCTGGGGAAGGGAATGCAGGGTTACTGGGGCTGGGCCCAGAGGCAGCAGCACCAGGGAAAAGGATTCGAAAGCCTTCTCTGCTGTATGAGGGATTTGAGAGCCCCACAATGGCTTCTGTACCAGCTTTACAACTGGCCCCTGCCAATCCACCACCCCCTGAGGTGTCCAATCCCAAAAAGCCAGGACGGGTAACAAACCAACTGCAGTACCTGCACAAGGTAGTGATGAAGGCTCTGTGGAAGCATCAGTTTGCATGGCCATTCCGGCAGCCTGTGGACGCTGTGAAGCTGGGTTTGCCG
Seq C2 exon
GATTATCACAAAATTATAAAACAGCCTATGGACATGGGTACTATCAAGAGGAGACTTGAAAACAATTACTACTGGGCTGCCTCAGAATGTATGCAGGATTTTAATACTATGTTTACCAACTGTTACATTTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024335-'3-9,'3-7,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.387 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
PF0043920=Bromodomain=PU(31.8=26.5)
C2:
PF0043920=Bromodomain=PU(75.0=97.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTTCCTGCTGTCGCCG
R:
ATTCTGAGGCAGCCCAGTAGT
Band lengths:
342-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: