HsaEX6046533 @ hg19
Exon Skipping
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:1103]
Coordinates
chr6:32939372-32943298:+
Coord C1 exon
chr6:32939372-32940704
Coord A exon
chr6:32942239-32942542
Coord C2 exon
chr6:32943161-32943298
Length
304 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCCCATCTTTACAGGCT
3' ss Score
10.3
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
TCTACTCCGCCCTCAAGAGGATTTCAAAGATGGAGGCGGCGGCTCCCTAAACCACTTTTCGTGTTCATCCGCCTCCATCCGAGATCGAAACGGGACCTCGTCGGCCCCGTAGGGGCCCGACAAGAAGAGGGAATCCCTGCAGACCAACAGCGGGCTATATTGACGACGGTGTCTGAGATCGGGGACCGTCTTTTGAAGAGTCAGTCCCTCCTTAGTTGCCCGCCTCAGCTGAGGCCGCCGCCATTTTCTTGCTGTCCGCCGTCTGCAGAGCGCGCCAAGCTGCCCGGAGCTCTCCGAGAGGCCCCAAAGAGACTGCTTTCGTGCCGGCCAGGCAGGGGGTTTGTCGCCTGGAGGCCCAAGAGGAACGGCCTCCCCCCAACTTAGCGGGTTATGCTGGACCGGGCGGTGAGGGGAACCGAGGCCACCCGGACTTTCCGCGGCTGAGGGCAGCGCCGGTTCCTTGCGGTCAAGATGCTGCAAAACGTGACTCCCCACAATAA
Seq A exon
GCTCCCTGGGGAAGGGAATGCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGGGAAGAGGATTCGAAAACCCTCTCTCTTGTATGAGGGCTTTGAGAGCCCCACAATGGCTTCGGTGCCTGCTTTGCAACTTACCCCTGCCAACCCACCACCCCCGGAGGTGTCCAATCCCAAAAAGCCAGGACGAGTTACCAACCAGCTGCAATACCTACACAAGGTAGTGATGAAGGCTCTGTGGAAACATCAGTTCGCATGGCCATTCCGGCAGCCTGTGGATGCTGTCAAACTGGGTCTACCG
Seq C2 exon
GATTATCACAAAATTATAAAACAGCCTATGGACATGGGTACTATTAAGAGGAGACTTGAAAACAATTATTATTGGGCTGCTTCAGAGTGTATGCAAGATTTTAATACCATGTTCACCAACTGTTACATTTACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256-'5-13,'5-11,7-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.419 C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
PF0043920=Bromodomain=PU(31.8=26.5)
C2:
PF0043920=Bromodomain=PU(75.0=97.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTCTTGCTGTCCGCCGTC
R:
TGCATACACTCTGAAGCAGCC
Band lengths:
353-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)