GgaEX1011181 @ galGal4
Exon Skipping
Gene
ENSGALG00000000156 | BRD2
Description
bromodomain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001025845]
Coordinates
chr16:85279-90969:+
Coord C1 exon
chr16:85279-85466
Coord A exon
chr16:89699-89999
Coord C2 exon
chr16:90832-90969
Length
301 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTGCTCCCTTGCAGGAT
3' ss Score
12.92
5' ss Seq
CCGGTAACG
5' ss Score
7.34
Exon sequences
Seq C1 exon
GTCGGAGTGGCGCGGGGCCGTCACGTGACGGCGGGTGGCCAATCACGGTGCAGCTGACGTAGCGCGTGGCTCCTTTTTCTGCCCTGGGATGTTTTTTTTGATTTTTTGCCCCAAAAACGGGGCTTTAAGGGGGCGACGCGAGGATGATATCGGGTTGGGGGTCGTGGCCCTGCGTGGGAGCGGCTCAG
Seq A exon
GATTCTGGGGGAGGGAAATGCCGGGCTTATGGGTTTGGCGACGGAATCGACCCCGGGCAAACGCATCCGCAAACCCTCGCTGCTTTACGAGGGCTTCGAGAGCCCCACCATGGCCTCGGTGCCGGCCCTACAGACCCCCCAGGCGAACCCCCCTCCGCCAGAGGTCTCGAACCCCAAAAAGCCCGGCCGGGTCACCAACCAGCTGCAGTACCTGCACAAAGTGGTGATGAAAGCCCTGTGGAAGCACCAGTTCGCTTGGCCTTTCCGTCAGCCTGTCGACGCCGTCAAGCTGGGTCTGCCG
Seq C2 exon
GATTACCACAAGATCATCAAGCAGCCCATGGACATGGGGACGATCAAACGGCGCTTGGAGAACAACTACTACTGGGGGGCAGCTGAGTGCATGCAGGACTTCAACACCATGTTCACAAACTGCTATATCTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156_MULTIEX1-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.398 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(31.8=42.2)
C2:
PF0043920=Bromodomain=FE(52.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGCCAATCACGGTG
R:
AGATATAGCAGTTTGTGAACATGGTG
Band lengths:
286-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]