MmuEX6077040 @ mm10
Exon Skipping
Gene
ENSMUSG00000024335 | Brd2
Description
bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]
Coordinates
chr17:34116198-34119900:-
Coord C1 exon
chr17:34118606-34119900
Coord A exon
chr17:34116908-34117211
Coord C2 exon
chr17:34116198-34116335
Length
304 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCCCCTTTTTGCAGGCT
3' ss Score
11.13
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CCCTCTACTCCGCCCTCAAGAGGATTTCAAAGATGGAGGCGGCGGCTCTCTGAAACCCCTTTTTGGTGCTCATCCGCCTCCATCGGAGGTCTGACGCGGCTCTCGTGACCCCCCGGCGACCGCGGCGGGAAGAGGGGACCCCTGTCCACCGGCGGCAGGCCGAATTGACGACGGTGTCCAGTTTCGGGGACTGCCGGGTTTGCAGACTGCGTTCTCCTGTGGCTCGCCGGCCGGCAGAGGCCGCCGCCATTTTCCTGCTGTCGCCGCCTGCGGAGCGTGCAAAGCTGCCGGAGTTGCGGGGAGGACGGCGCAGGAGACAGCGTTCCCGCCGGTCCCGCAACGAGGCTGACGCCTGGAGGGCCAAGGGCAGCGGCCTTCCCCCCACTTCCCGGGTTATGCTGGGCCCGGCGGTGAGGGGAGCCGAGGCTACCCGGACTTCACGCAGCTGAGCGGCGGCGGTTCCCTGAGGTCAAGATGCTGCAAAACGTGACTCCCCACAA
Seq A exon
GCTCCCTGGGGAAGGGAATGCAGGGTTACTGGGGCTGGGCCCAGAGGCAGCAGCACCAGGGAAAAGGATTCGAAAGCCTTCTCTGCTGTATGAGGGATTTGAGAGCCCCACAATGGCTTCTGTACCAGCTTTACAACTGGCCCCTGCCAATCCACCACCCCCTGAGGTGTCCAATCCCAAAAAGCCAGGACGGGTAACAAACCAACTGCAGTACCTGCACAAGGTAGTGATGAAGGCTCTGTGGAAGCATCAGTTTGCATGGCCATTCCGGCAGCCTGTGGACGCTGTGAAGCTGGGTTTGCCG
Seq C2 exon
GATTATCACAAAATTATAAAACAGCCTATGGACATGGGTACTATCAAGAGGAGACTTGAAAACAATTACTACTGGGCTGCCTCAGAATGTATGCAGGATTTTAATACTATGTTTACCAACTGTTACATTTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024335_MULTIEX1-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.398 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
PF0043920=Bromodomain=PU(31.8=26.5)
C2:
PF0043920=Bromodomain=FE(52.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTTCCTGCTGTCGCCG
R:
ATTCTGAGGCAGCCCAGTAGT
Band lengths:
342-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types