MmuEX6019344 @ mm9
Exon Skipping
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107770319-107772709:+
Coord C1 exon
chr5:107770319-107770460
Coord A exon
chr5:107771039-107771278
Coord C2 exon
chr5:107772572-107772709
Length
240 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTGATTTTTCAGGAC
3' ss Score
12.1
5' ss Seq
CCTGTGAGC
5' ss Score
3.28
Exon sequences
Seq C1 exon
GAATTTGTAGACTTTTCCTGCTAAGACCTCAATTTGTATTTTTGAAGAACAGAAAGAAATTCTGTGACGTGTTGAAATAATTTAAACCATCTAAGACCAAGACACACATAATGAAGCAATGCATACTATTTATATAAAAAAG
Seq A exon
GACATGTCCTCTTAGACAACTTTAAAATACCAGGATCCGAAGTGGTTGAGAATGTCTCTGCCAAGTCGACAAACAGCTATTGTTAACCCCCCTCCACCAGAGTACATAAACACTAAGAAGAGTGGGCGGTTGACGAATCAGCTGCAGTTCCTACAGAGGGTTGTGCTGAAGGCCCTGTGGAAGCACGGCTTCTCTTGGCCTTTCCAACAGCCGGTGGACGCCGTGAAACTAAAGCTGCCT
Seq C2 exon
GACTATTACACCATCATAAAAACCCCAATGGATTTAAATACAATTAAGAAGCGGTTGGAAAATAAGTATTATGAGAAGGCTTCCGAATGCATAGAAGACTTCAACACAATGTTCTCAAACTGCTACTTATACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279-'4-2,'4-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(32.6=44.4)
C2:
PF0043920=Bromodomain=FE(52.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAGACTTTTCCTGCTAAGACCT
R:
CTTGTTGTATAAGTAGCAGTTTGAGA
Band lengths:
276-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: