MmuEX6019344 @ mm10
Exon Skipping
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107326693-107359705:+
Coord C1 exon
chr5:107326693-107326813
Coord A exon
chr5:107342020-107342259
Coord C2 exon
chr5:107359580-107359705
Length
240 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTGATTTTTCAGGAC
3' ss Score
12.1
5' ss Seq
CCTGTGAGC
5' ss Score
3.28
Exon sequences
Seq C1 exon
AAACTGAATCCTGGAACACATCAAAGACATCATCTATCAAAATCAAGTAGGTCACATTCCAGGGACACAGGGATGGTTCAGTATGCAAAAATTCATCACCATAATCCACCATATAAACAGA
Seq A exon
GACATGTCCTCTTAGACAACTTTAAAATACCAGGATCCGAAGTGGTTGAGAATGTCTCTGCCAAGTCGACAAACAGCTATTGTTAACCCCCCTCCACCAGAGTACATAAACACTAAGAAGAGTGGGCGGTTGACGAATCAGCTGCAGTTCCTACAGAGGGTTGTGCTGAAGGCCCTGTGGAAGCACGGCTTCTCTTGGCCTTTCCAACAGCCGGTGGACGCCGTGAAACTAAAGCTGCCT
Seq C2 exon
CAAAGAAGGTTGTCAGGTCTAAGGAGGAGCTCCATTCTGAAAAAAAGCTGGAGCTGGAGAGGCGGTTGCTGGACGTCAACAATCAGCTGAATTGTAGGAAACGGCAAACGAAACGTCCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279_MULTIEX1-1/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.143 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043920=Bromodomain=PU(32.6=44.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGAATCCTGGAACACATCA
R:
TTTGCTGGACGTTTCGTTTGC
Band lengths:
244-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types