HsaALTD0001726-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000198561 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:2515]
Coordinates
chr11:57529418-57556627:+
Coord C1 exon
chr11:57529418-57529518
Coord A exon
chr11:57529519-57529591
Coord C2 exon
chr11:57556509-57556627
Length
73 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACC
5' ss Score
6.62
3' ss Seq
TCCTTCAAATATTTCTGCAGCTC
3' ss Score
7.8
Exon sequences
Seq C1 exon
GCGAAAAATCAACTGCCCTGCTGGATTTGTCTTTCTCAGCACCTTGGCGAAGCCTTGGGTTTCTTTCTTAAAGGACTGATTTTTAGAACTCCACATTTGAG
Seq A exon
GTGTGTGGCTTTTGAAGAAAATGTATGTACTGACGGGAAAAGGAGGATAAGCAAGTCGAATTTTTGTCTTACG
Seq C2 exon
CTCTCTCCTTCCTGCTTCCTCCTTGCTGTGGTGGCTGGGATGCTTCTTCCATGATTTTTTGAATCTAGACTGGGCTGTTCTCTGTGTTAAACCAATCAGTTGCGACCTTCTCTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCTGCTGGATTTGTCTT
R:
ACACAGAGAACAGCCCAGTCT
Band lengths:
176-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)