HsaEX0017866 @ hg19
Exon Skipping
Gene
ENSG00000198561 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:2515]
Coordinates
chr11:57529269-57559058:+
Coord C1 exon
chr11:57529269-57529518
Coord A exon
chr11:57556509-57556627
Coord C2 exon
chr11:57558857-57559058
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCCTTCAAATATTTCTGCAGCTC
3' ss Score
7.8
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTGCCAGATCAGTTTGTCACCACCCAGGCTCCCTTGCCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGGGGGAAAAAAAAGAGAGAGGGAGAGAGAGAGAAAGAAGAGCAGGAAAGATCCCGAAAGGAGGAAGAGGTGGCGAAAAATCAACTGCCCTGCTGGATTTGTCTTTCTCAGCACCTTGGCGAAGCCTTGGGTTTCTTTCTTAAAGGACTGATTTTTAGAACTCCACATTTGAG
Seq A exon
CTCTCTCCTTCCTGCTTCCTCCTTGCTGTGGTGGCTGGGATGCTTCTTCCATGATTTTTTGAATCTAGACTGGGCTGTTCTCTGTGTTAAACCAATCAGTTGCGACCTTCTCTTAACAG
Seq C2 exon
TGTGAAGTGAGGGGGTCTCTCTCCCTCCTTCTCCTTCCTCTGTGATTCACCTTCCTTTTTACCCTGCCCTGCGGCGGCTCCGCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAGGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAACGGCGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561-'0-3,'0-2,4-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.908
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCTGCTGGATTTGTCTT
R:
GGGCCTCTTGTTCCTTCACAG
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)