RnoEX0025205 @ rn6
Exon Skipping
Gene
ENSRNOG00000030790 | Ctnnd1
Description
catenin delta 1 [Source:RGD Symbol;Acc:1305643]
Coordinates
chr3:72026303-72052990:-
Coord C1 exon
chr3:72052712-72052990
Coord A exon
chr3:72028190-72028307
Coord C2 exon
chr3:72026303-72026591
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCCTCCAAATATTTCTGCAGCTT
3' ss Score
6.5
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGGGGAAAAAGAGAGAGGGAAAGGGAGAGAGAGAACGAGGGCGAGCAAGAGGGAGGGAGAGAGAGCGAGAGAGCGAGAGAGGCCGACAGACACGAAGGGAGAGGAGAAAGGCAGAAAGATCGTGGAACGAGGAAGAGGAAGAGGCGGCGAACCTCGCTGGATTCGTCTTTCTCAGCACATTGGTGAAGCTTTGGGTTTGTTTCTTAAAAGGACTGGCTTTAGAAGTCCACATTTGAG
Seq A exon
CTTTCTCCTTCCTGCTTGCTGCTTGCTGAGGTGGCTGGGATGCTTCCATGGTTTATCTGAATCTAGACTGGGCTATTCTCTGTGCTAAACCAATCAATTACGGGCCTTCTCTTAACAG
Seq C2 exon
TGTGAAGTGAGGGGACCTACTCCCTTCTTTCTACTCCCTCTGTGGTCCACCTTACTTTTTATCCTGCCCTGCGGCGGCTCCTCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAAGAACAAGAGGCACAATTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAGCGGCGCCATGTGTCGGCGCAACTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACTCACTCATGGCCAACGGCACCCTCACCCGTCGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030790_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.877
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACACGAAGGGAGAGGAG
R:
ATGAAGGTAAGGGGAGGAGCC
Band lengths:
248-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]