BtaEX0010334 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82283934-82310607:+
Coord C1 exon
chr15:82283934-82284179
Coord A exon
chr15:82307059-82307175
Coord C2 exon
chr15:82310536-82310607
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCTCCACGTATTCCTACAGCTC
3' ss Score
7.25
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AGGGCTGCCAGATCAGTTTGTCACCACCCAGGCTCCCTAGCCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGAGAAAAAAAAAGGGGAGAGAGAGAAAGAAGAGCAGGAAAGATCCTGAAAGGAGGAAGAGGTGGCGAAAAAGCAACTACCTTGCTGGATTTGTCTTTCTCAGCACATTGACGGAGCCTTGGTTTTCTCTCTTAAAGAAGTGGTTTTCAGAAGTCCACATTTGAG
Seq A exon
CTCTCTCCTTCCTGCTTCCTCCTTGCTGTGGTGGCTGGGATGCTTCTCCCATGACACTTTGGATCTAGCCTGGGCTGTTTTCTGTTAAACCAATCAGTTGCGACCTTCTCTTAACAG
Seq C2 exon
AACGGCCGCTTTGTGGGCGATGCTGACCTTGAGCGACAGAAATTTTCAGATCTAAGCCTCAACGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411_MULTIEX1-3/5=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.833
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000043778fB1958
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGTGCAACTTCCATTT
R:
TTTCTGTCGCTCAAGGTCAGC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development