MmuEX0013072 @ mm9
Exon Skipping
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84464427-84490902:-
Coord C1 exon
chr2:84490563-84490902
Coord A exon
chr2:84466177-84466294
Coord C2 exon
chr2:84464427-84464715
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCCTTCAAATATTTCTGCAGCTC
3' ss Score
7.8
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTGCCAGATCAGTTTGTCACCACCCAGGCTGCCTTGCCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGGGGAAAAGGAGAGAGGGAGAGAGAGGGAGAGAGGGAGAGAGGGAAAGGGAGAGAGAGAGAGAGAGAAAGAGGACGATCAAGAGGGAGGGAGGGAGAGCCAGCGAGCGAGACAGACACGGAGGGAGAGGAGAAAGGCAGGAAAGATCCTGGAACGAGGAAGAGGAAGAGGCGGCGAACCTCGCTGGATTTGTCTTTCTCAGCACATTGGTGAAGCTTTGGGTTTGTTTCTTAAAGGACTGGCTTTAGAAGTCCACATTTGAG
Seq A exon
CTCTCTCCTTCCTGCTTGCTGCTTGCTGAGGTGGCTGGGGTGCTTCCATGGTTTATCTGAGTCTAGACTGGGCTATTCTCTGTGCTAAACCAATCAATTACGGGCCTTCTCTTAACAG
Seq C2 exon
TGTGAAGTGAGGGGACCTACTCCCTCCTTTCTACTCCCTCTGTGGTCCACCTTACTTTTTATCCTGCCCTGCGGCGGCTCCTCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAAGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAAGAGGAGCGGCGCCATGTCTCGGCGCAACTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACTCACTCATGGCCAATGGCACCCTCACTCGTCGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101-'0-5,'0-4,7-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.911
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGAGGGAGAGGAGAAAG
R:
ATGAAGGTAAGGGGAGGAGCC
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: