MmuEX0013077 @ mm9
Exon Skipping
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84466177-84488694:-
Coord C1 exon
chr2:84488488-84488694
Coord A exon
chr2:84478156-84478262
Coord C2 exon
chr2:84466177-84466294
Length
107 bp
Sequences
Splice sites
3' ss Seq
GACAAAAGTTTCTTATTTTTAAA
3' ss Score
-12.95
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GACTGCTGGTGATCTGGGTCCGGCTTGGAAACTGAGCTTTGTGTAGCCGTGTTGCGCAGCATTAGGGTCCAGAACTATTTACAAACTAAGGTATTGTTTGGCCTGCCGTATAGTGAAGAGCCTTTTGAGGTGATAAGATGGAAGATTTTTGTCTTTTACTTCTCCTTCCTTGGTTCTTTCTGGAATTACAGGAAAGAGTACAGATAA
Seq A exon
AAATCGAGCCAAGCAAGCATTCCAAGTGGGGCCAGTTGGCACTCTTCCTGCTATTTTAGTCCAGGCTTCTCCTTCCTACTGATGGTCAATTGTATTAACTGTTTGAT
Seq C2 exon
CTCTCTCCTTCCTGCTTGCTGCTTGCTGAGGTGGCTGGGGTGCTTCCATGGTTTATCTGAGTCTAGACTGGGCTATTCTCTGTGCTAAACCAATCAATTACGGGCCTTCTCTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101-'3-5,'3-4,4-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTTGGAAACTGAGCTTT
R:
TAAACCATGGAAGCACCCCAG
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: