MmuEX0013073 @ mm9
Exon Skipping
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84462168-84490902:-
Coord C1 exon
chr2:84490563-84490902
Coord A exon
chr2:84464427-84464715
Coord C2 exon
chr2:84462168-84462239
Length
289 bp
Sequences
Splice sites
3' ss Seq
TTCTCCGCCCCCCTCCCTAGTGT
3' ss Score
9.74
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CTGCCAGATCAGTTTGTCACCACCCAGGCTGCCTTGCCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGGGGAAAAGGAGAGAGGGAGAGAGAGGGAGAGAGGGAGAGAGGGAAAGGGAGAGAGAGAGAGAGAGAAAGAGGACGATCAAGAGGGAGGGAGGGAGAGCCAGCGAGCGAGACAGACACGGAGGGAGAGGAGAAAGGCAGGAAAGATCCTGGAACGAGGAAGAGGAAGAGGCGGCGAACCTCGCTGGATTTGTCTTTCTCAGCACATTGGTGAAGCTTTGGGTTTGTTTCTTAAAGGACTGGCTTTAGAAGTCCACATTTGAG
Seq A exon
TGTGAAGTGAGGGGACCTACTCCCTCCTTTCTACTCCCTCTGTGGTCCACCTTACTTTTTATCCTGCCCTGCGGCGGCTCCTCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAAGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAAGAGGAGCGGCGCCATGTCTCGGCGCAACTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACTCACTCATGGCCAATGGCACCCTCACTCGTCGGCATCAG
Seq C2 exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAGAGACAGAAATTTTCAGATCTGAAACTCAACGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101-'0-7,'0-5,11-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.911 C2=0.884
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
ENSMUSP00000042543, ENSMUSP00000064518, ENSMUSP00000065252, ENSMUSP00000107313, ENSMUSP00000107314, ENSMUSP00000107315, ENSMUSP00000107316, ENSMUSP00000107317, ENSMUSP00000107318, ENSMUSP00000107319, ENSMUSP00000107320, ENSMUSP00000107321, ENSMUSP00000107322, ENSMUSP00000107324, ENSMUSP00000107325, ENSMUSP00000107326
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGAGGGAGAGAGAGGG
R:
GTCTCTCAAGGTCAGCATCGC
Band lengths:
292-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: