GgaEX1018139 @ galGal4
Exon Skipping
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16255877-16276574:-
Coord C1 exon
chr5:16274770-16276574
Coord A exon
chr5:16257038-16257352
Coord C2 exon
chr5:16255877-16255948
Length
315 bp
Sequences
Splice sites
3' ss Seq
TCAAATCATGCGCAGTGAAGAGT
3' ss Score
-6.11
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCGCCTCCCGGGTGCCCTCGGCCGGCAGGGGGCGCCCGTTGCGCTGACTCTGAGGTGAAGCCGTGCGGCCACGCCGCCTGCGGCCTTCACTCAACCGGGCCCGGGGTGTCGGGACGGCCGCCGCGCCGCCTACCTGTCCGTGCGGGTGCTGGAGGTCGCCCCTCGGGCCCGGCGTCGCGGTGGTGCGAGCGGAGAGAGGGAACGGGGCGCGAGGCCTCGGGCGCGGAGCCGCTGGGCCGGGCCTGGCCTAGCGCGCCCGCACGCGGACGGTAGGGGCGACGGCTCGCGCATGCGCGTCGGCCCTGCCGCACGTGCGTGCCTCGCGCCGCGCCTCTTCGCTCCGCCGTGTTCTGCCCAGCAACGGCTCCGCTATTGGCTCAACTCCCGACCAATCGCAGCGCGGCGGGAACTTAGGCGGGAAGGTCGCGCAGGAGGTGCTGGTGGATGCTGAGG
Seq A exon
AGTGGGGCTCCTCCCCTTCTGGGTCACTTTTCCTCCTCTCACCTTGACACCAAGCCAACTCTGCTTGTGCCTCCCTGTGCCCTTCGCCCCTTCCCCGCCCGTCCTGGGTAACCGTCACCCATGGACGACTCGGAAGTGGAGTCAACCGCCAGCATCCTTGCCTCTGTCAAGGAGCAGGAGGCGCAGTTTGAGAAGCTGACACGGGCGCTGGAGGAGGAGCGGCGCCATGTCTCAGCCCAGCTGGAACGAGTGCGGGTCTCCCCACAGGACGCCGGCCCGGGCTTGGCCAACGGCACACTCTCCCGGCGGCACCAG
Seq C2 exon
AACGGCCGTTTCTTGGGTGATGCTGACCTGGAAAGACAGAAGTTCCCAGATCTGAAGCTCAACGGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCGAGCGGAGAGAG
R:
CTGTGGTCCGTTGAGCTTCAG
Band lengths:
345-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]