DreEX0024875 @ danRer10
Exon Skipping
Gene
ENSDARG00000078233 | ctnnd1
Description
catenin (cadherin-associated protein), delta 1 [Source:ZFIN;Acc:ZDB-GENE-110208-9]
Coordinates
chr1:43471942-43499996:+
Coord C1 exon
chr1:43471942-43472005
Coord A exon
chr1:43494933-43495084
Coord C2 exon
chr1:43499925-43499996
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCCTCTTTCTCTCAGTGT
3' ss Score
10.49
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GAGCAGACGCTTCACGGTGGGACGACGAGCAAAGAGGAGTGAACAAGGGGAGCGAGATAGATTG
Seq A exon
TGTGTATGGAGCAGTGTGAGAATGCCGCATCTCTCCTGGCCTCCGTGCGAGAGCAAGAGATGCAGTTTGAGCGTCTGACTCGAGCTCTGGAGGAGGAGAGGAGGAGCGTGGGGCCGTCCGGTACCCTACCCCGCCCCCTCCCCACCCTGCAG
Seq C2 exon
AACGGCCGTATTACTGGTGATGCAGAGTTAGAACGGCTCAAATTGAGTGAGGGATACATAAACGGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078233_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.735 C2=0.750
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACGGTGGGACGACGAG
R:
TGGGTCCCGTTTATGTATCCCT
Band lengths:
126-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]