RnoEX0025206 @ rn6
Exon Skipping
Gene
ENSRNOG00000030790 | Ctnnd1
Description
catenin delta 1 [Source:RGD Symbol;Acc:1305643]
Coordinates
chr3:72024077-72052990:-
Coord C1 exon
chr3:72052712-72052990
Coord A exon
chr3:72026303-72026591
Coord C2 exon
chr3:72024077-72024148
Length
289 bp
Sequences
Splice sites
3' ss Seq
ACCCCTCCCCCCACCCCTAGTGT
3' ss Score
10.3
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GCCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGGGGAAAAAGAGAGAGGGAAAGGGAGAGAGAGAACGAGGGCGAGCAAGAGGGAGGGAGAGAGAGCGAGAGAGCGAGAGAGGCCGACAGACACGAAGGGAGAGGAGAAAGGCAGAAAGATCGTGGAACGAGGAAGAGGAAGAGGCGGCGAACCTCGCTGGATTCGTCTTTCTCAGCACATTGGTGAAGCTTTGGGTTTGTTTCTTAAAAGGACTGGCTTTAGAAGTCCACATTTGAG
Seq A exon
TGTGAAGTGAGGGGACCTACTCCCTTCTTTCTACTCCCTCTGTGGTCCACCTTACTTTTTATCCTGCCCTGCGGCGGCTCCTCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAAGAACAAGAGGCACAATTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAGCGGCGCCATGTGTCGGCGCAACTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACTCACTCATGGCCAACGGCACCCTCACCCGTCGGCATCAG
Seq C2 exon
AACGGCCGGTTTGTGGGCGATGCTGACCTTGAGAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030790_MULTIEX1-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.877 C2=0.757
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAAGGGAGAGAGAGAACG
R:
CTGGGGTCCGTTGAGTTTCAA
Band lengths:
294-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]