BtaEX0010335 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82283934-82310607:+
Coord C1 exon
chr15:82283934-82284179
Coord A exon
chr15:82308357-82308623
Coord C2 exon
chr15:82310536-82310607
Length
267 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCGCCTCCCCGGTAGTGT
3' ss Score
6.38
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AGGGCTGCCAGATCAGTTTGTCACCACCCAGGCTCCCTAGCCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGAGAAAAAAAAAGGGGAGAGAGAGAAAGAAGAGCAGGAAAGATCCTGAAAGGAGGAAGAGGTGGCGAAAAAGCAACTACCTTGCTGGATTTGTCTTTCTCAGCACATTGACGGAGCCTTGGTTTTCTCTCTTAAAGAAGTGGTTTTCAGAAGTCCACATTTGAG
Seq A exon
TGTGCAGTGAGGGGCCTCCTCCCTCCCCCCCTCCCTCAGTGGGCCATCTTCTCTTGCCCTGCCCTCACCTCCATGGACGACTCGGAGGTGGAGTCGCCCGCCAGCATCCTGGCCTCCGTGAAGGAGCAGGAGGCGCAATTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAGCGGCGCCACGTCTCGGCGCAGCTGGAGCGCGTCCGCGTCTCCCCGCAGGACGCCAGCCCGCTCCTGGCCAACGGCACGCTCACCCGCCGGCACCAG
Seq C2 exon
AACGGCCGCTTTGTGGGCGATGCTGACCTTGAGCGACAGAAATTTTCAGATCTAAGCCTCAACGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411_MULTIEX1-4/5=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.923 C2=0.833
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTTTGTCACCACCCAGG
R:
GGGGTCCGTTGAGGCTTAGAT
Band lengths:
305-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development