BtaEX0010333 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82283934-82307175:+
Coord C1 exon
chr15:82283934-82284179
Coord A exon
chr15:82306389-82306525
Coord C2 exon
chr15:82307059-82307175
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTAGGTCTCCTGCATTGCAGGCG
3' ss Score
6.06
5' ss Seq
TTGGTAGGG
5' ss Score
4.44
Exon sequences
Seq C1 exon
AGGGCTGCCAGATCAGTTTGTCACCACCCAGGCTCCCTAGCCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGAGAAAAAAAAAGGGGAGAGAGAGAAAGAAGAGCAGGAAAGATCCTGAAAGGAGGAAGAGGTGGCGAAAAAGCAACTACCTTGCTGGATTTGTCTTTCTCAGCACATTGACGGAGCCTTGGTTTTCTCTCTTAAAGAAGTGGTTTTCAGAAGTCCACATTTGAG
Seq A exon
GCGGATTCTTTACCAGCTGAGCCACCGGGGAAGCCCAAGGAGTTTGTTGGGCGCCTGCTTGTCAGTTCCTCTGGATACTCGTGCTTGCTGAACGCTGCGTGCACACTGAAGCAGACAGGCCTGCGCGTCTGTGCTTG
Seq C2 exon
CTCTCTCCTTCCTGCTTCCTCCTTGCTGTGGTGGCTGGGATGCTTCTCCCATGACACTTTGGATCTAGCCTGGGCTGTTTTCTGTTAAACCAATCAGTTGCGACCTTCTCTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411_MULTIEX1-2/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGTGCAACTTCCATTT
R:
TGTCATGGGAGAAGCATCCCA
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development