HsaALTD0001878-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000140995 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:25969]
Coordinates
chr16:90015874-90020784:+
Coord C1 exon
chr16:90015874-90015921
Coord A exon
chr16:90015922-90016046
Coord C2 exon
chr16:90020651-90020784
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCGT
5' ss Score
6.47
3' ss Seq
TGGCCCTGCCTGGCCCTCAGGTG
3' ss Score
8.44
Exon sequences
Seq C1 exon
ATGGCCATCCTGTCCCTGCGAGCCCCTGGGCCCTGGCAGGCGATGCAG
Seq A exon
GTATGGGCAGACAGGACGCTGTTGACTCCGCACACCGGGGTGACTTCTCAGGTTCTCGGGGTGGCAGCTGCAGTGATGACACCGCTTCCTGGTGGTCACGCCGCGGGCAGGACGCGGGAGGCCAG
Seq C2 exon
GTGGGATGCTATGGAATATGATGAGAAGCTGGCCCGTTTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGTCTGGGCCGAGACAGCATGAGCAGGGCCCTGGGGAGGAGGTCCCGGACGTCACTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140995-1-9,2-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCATCCTGTCCCTGC
R:
CTTCAGGAGTGACGTCCGGG
Band lengths:
182-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)