HsaEX0019072 @ hg19
Exon Skipping
Gene
ENSG00000140995 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:25969]
Coordinates
chr16:90015183-90020784:+
Coord C1 exon
chr16:90015183-90015222
Coord A exon
chr16:90015825-90015921
Coord C2 exon
chr16:90020651-90020784
Length
97 bp
Sequences
Splice sites
3' ss Seq
GGGGTGGCTTCTCCCTGCAGCAG
3' ss Score
7.73
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATCCAGCGCAGCCGGGAGACAGATGCGAGGCGGCGGTCAG
Seq A exon
CAGGTGCCGAACCCACGGCCAGGCTTCCGTGGCCAGCAGCCCTAGAGGAATGGCCATCCTGTCCCTGCGAGCCCCTGGGCCCTGGCAGGCGATGCAG
Seq C2 exon
GTGGGATGCTATGGAATATGATGAGAAGCTGGCCCGTTTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGTCTGGGCCGAGACAGCATGAGCAGGGCCCTGGGGAGGAGGTCCCGGACGTCACTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140995_MULTIEX1-1/5=C1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.586 C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCGGGAGACAGATG
R:
CTTCAGGAGTGACGTCCGGG
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)