HsaALTD0002005-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000115325 | DOK1
Description
docking protein 1 [Source:HGNC Symbol;Acc:HGNC:2990]
Coordinates
chr2:74554794-74555231:+
Coord C1 exon
chr2:74554794-74554814
Coord A exon
chr2:74554815-74554859
Coord C2 exon
chr2:74555156-74555231
Length
45 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
CTCTCTCTCTCTCCCTAGAGGTG
3' ss Score
4.87
Exon sequences
Seq C1 exon
AGTCAGCGCTTTGGGACCAAG
Seq A exon
GTAGTCTGGCGCATGGATGCCGAACCTTATCCGGGCTAGTAGTGG
Seq C2 exon
GTGGAGGAAGACCTGGGCCGTGCTCTACCCGGCCAGTCCCCACGGCGTAGCGCGGCTCGAGTTCTTTGACCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115325-3-14,4-14,5-14,6-14-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.9=80.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCGCTTTGGGACCAAG
R:
ATGGTCAAAGAACTCGAGCCG
Band lengths:
93-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains