HsaEX1022025 @ hg38
Exon Skipping
Gene
ENSG00000115318 | LOXL3
Description
lysyl oxidase like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
Coordinates
chr2:74552322-74555690:-
Coord C1 exon
chr2:74555661-74555690
Coord A exon
chr2:74553876-74553938
Coord C2 exon
chr2:74552322-74552646
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTGGAAGTCC
3' ss Score
4.86
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CCCGGGCTTCTGAGGCGTCTACCTTCCCAG
Seq A exon
TCCTAGGACTGATCTCCAGGACCAGCACTCTTCTCCCAGCCCTTAGGGTCCTGCTCGGCCAAG
Seq C2 exon
GCCTTCCCTGCCATGCGACCTGTCAGTGTCTGGCAGTGGAGCCCCTGGGGGCTGCTGCTGTGCCTGCTGTGCAGTTCGTGCTTGGGGTCTCCGTCCCCTTCCACGGGCCCTGAGAAGAAGGCCGGGAGCCAGGGGCTTCGGTTCCGGCTGGCTGGCTTCCCCAGGAAGCCCTACGAGGGCCGCGTGGAGATACAGCGAGCTGGTGAATGGGGCACCATCTGCGATGATGACTTCACGCTGCAGGCTGCCCACATCCTCTGCCGGGAGCTGGGCTTCACAGAGGCCACAGGCTGGACCCACAGTGCCAAATATGGCCCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115318_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.076
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0053013=SRCR=PU(57.3=52.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAGGCGTCTACCTTCCC
R:
CCTTCTTCTCAGGGCCCGT
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains