HsaALTA0002603-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000115325 | DOK1
Description
docking protein 1 [Source:HGNC Symbol;Acc:HGNC:2990]
Coordinates
chr2:74554794-74555231:+
Coord C1 exon
chr2:74554794-74554859
Coord A exon
NA
Coord C2 exon
chr2:74555156-74555231
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
CTCTCTCTCTCTCCCTAGAGGTG
3' ss Score
4.87
Exon sequences
Seq C1 exon
AGTCAGCGCTTTGGGACCAAGGTAGTCTGGCGCATGGATGCCGAACCTTATCCGGGCTAGTAGTGG
Seq A exon
NA
Seq C2 exon
GTGGAGGAAGACCTGGGCCGTGCTCTACCCGGCCAGTCCCCACGGCGTAGCGCGGCTCGAGTTCTTTGACCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115325-6-14,6-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.145
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016924=PH=PD(84.3=97.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAACCTTATCCGGGCTAGT
R:
ATGGTCAAAGAACTCGAGCCG
Band lengths:
99-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development