RnoALTA0012576-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007412 | Dok1
Description
docking protein 1 [Source:RGD Symbol;Acc:1309499]
Coordinates
chr4:113866000-113866674:-
Coord C1 exon
chr4:113866607-113866674
Coord A exon
NA
Coord C2 exon
chr4:113866000-113866297
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
TCTTTCGTTCTTTCCCAGAGGTG
3' ss Score
2.18
Exon sequences
Seq C1 exon
CCTTGGCCATGGACGGGGCTTTGATGGAGGGTCCGCTTTTTCTGCAGAGTCAGCGCTTCGGGACCAAG
Seq A exon
NA
Seq C2 exon
GTGGAAGAAAACTTGGGCTGTGCTTTACCCAGCCAGCCCTCACGGCGTGGCGCGGCTGGAATTCTTTGATCACAAGGGGTCGAGCTCTGGAGGGGGTCGAGGCGGCTCTCGCCGTCTAGACTGCAAGATGATACGCCTGGCTGAATGTGTGAGCGTGGTGCCTGTGACTGTGGAGAGTCCCCCTGAGCCCGGCGCCTCTGCCTTCCGCCTGGACACCGCACAACGCTCGCACCTGCTTGCAGCGGACGCCGCATCCAGCACTGCCTGGGTGCAGATTTTATGCAGAACCGCTTTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007412-0-2,0-1,0-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.9=80.0)
A:
NA
C2:
PF0016924=PH=PD(84.3=97.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTGCAGAGTCAGCGCTT
R:
GATCAAAGAATTCCAGCCGCG
Band lengths:
102-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]