MmuALTA0005752-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000068335 | Dok1
Description
docking protein 1 [Source:MGI Symbol;Acc:MGI:893587]
Coordinates
chr6:83032767-83033471:-
Coord C1 exon
chr6:83033371-83033471
Coord A exon
chr6:83033033-83033064
Coord C2 exon
chr6:83032767-83033032
Length
32 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
TCTTTCGTTCTTTCCCAGAGGTG
3' ss Score
2.18
Exon sequences
Seq C1 exon
AGCCCTCCGGGCCAGGAAGCGCGGAAGGAATCGCCTGGGCCATGGACGGGGCTGTGATGGAGGGTCCGCTTTTTCTGCAGAGTCAGCGCTTCGGGACCAAG
Seq A exon
GTGGAGGAAAACTTGGGCTGTGCTTTACCCAG
Seq C2 exon
CCAGTCCTCACGGCGTGGCGCGGCTGGAATTCTTTGATCACAAGGGGTCGAGCTCTAGAGGGGGTCGAGGCGGCTCTCGCCGTCTAGACTGCAAGATGATACGCCTGGCTGAATGTGTGAGCGTGGTGCCGGTGACTGTGGAGAGTCCCCCTGAGCCCGGCGCTGTTGCCTTCCGCCTGGACACCGCACAGCGCTCGCACCTGCTGGCGGCGGACGCCGTATCCAGCACCGCCTGGGTGCAGACTTTATGCAGAACCGCCTTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068335-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.9=80.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGGAGGGTCCGCTTTTT
R:
GACCCCCTCTAGAGCTCGAC
Band lengths:
114-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types