HsaALTD0002148-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000204371 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:14129]
Coordinates
chr6:31852169-31852793:-
Coord C1 exon
chr6:31852689-31852793
Coord A exon
chr6:31852668-31852688
Coord C2 exon
chr6:31852169-31852576
Length
21 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TTCCCCTCCTACCTCCACAGGAG
3' ss Score
11.36
Exon sequences
Seq C1 exon
GACAGTGGGGGGTGGACGCCCATCATCTGGGCTGCAGAGCACAAGCACATCGAGGTGATCCGCATGCTACTGACGCGGGGCGCCGACGTCACCCTCACTGACAAC
Seq A exon
GTGAGTGAGCGTTTGGTTGAG
Seq C2 exon
GAGGAGAACATCTGCCTGCACTGGGCCTCCTTCACGGGCAGCGCCGCCATCGCCGAAGTCCTTCTGAATGCGCGCTGTGACCTCCATGCTGTCAACTACCATGGGGACACCCCCCTGCACATCGCAGCTCGGGAGAGCTACCATGACTGCGTGCTGTGAGCCCCTGCCCCGCCCTTGATGCCCCTGCCCCCACTTCTTGCAGCCTCAGACCCTGCATTGGGCATCCTGTCCCCTCTTCAGGTTATTCCTGTCACGTGGGGCCAACCCTGAGCTGCGGAACAAAGAGGGGGACACAGCATGGGACCTGACTCCCGAGCGCTCCGACGTGTGGTTTGCGCTTCAACTCAACCGCAAGCTCCGACTTGGGGTGGGAAATCGGGCCATCCGCACAGAGAAGATCATCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204371-21-30,22-30-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.055
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.6=94.3),PF127962=Ank_2=PU(5.7=11.4)
A:
NA
C2:
PF127962=Ank_2=PD(18.6=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCACCCTCACTGACAAC
R:
GTTGACAGCATGGAGGTCACA
Band lengths:
117-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)