MmuALTD0004715-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:34908179-34908558:+
Coord C1 exon
chr17:34908179-34908278
Coord A exon
chr17:34908279-34908313
Coord C2 exon
chr17:34908404-34908558
Length
35 bp
Sequences
Splice sites
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
3' ss Seq
TCTGCCTCTCACCTCCACAGGAG
3' ss Score
11.07
Exon sequences
Seq C1 exon
TGGGGGCTGGACGCCCATCATCTGGGCAGCCGAGCACAAGCACATCGATGTGATTCGTATGCTGCTGACCCGGGGTGCCGATGTCACCCTGACTGACAAT
Seq A exon
GTGAGGGACACTCAAGGGGGCTCAGAGAACTTGGG
Seq C2 exon
GAGGAAAACATCTGCCTGCACTGGGCCTCCTTCACGGGTAGTGCCGCCATCGCTGAGGTCCTTCTGAATGCCCAGTGTGATCTCCATGCTGTCAACTACCATGGGGACACGCCCCTGCACATAGCCGCCAGGGAGAGCTACCATGACTGTGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787-46-50,47-50-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.6=94.3),PF127962=Ank_2=PU(7.0=14.3)
A:
NA
C2:
PF0002325=Ank=PD(5.9=3.8),PF127962=Ank_2=PU(56.1=86.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCGTATGCTGCTGACCCG
R:
GGCATTCAGAAGGACCTCAGC
Band lengths:
121-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types