HsaALTD0002148-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000204371 | EHMT2
Description
euchromatic histone lysine methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr6:31884392-31885016:-
Coord C1 exon
chr6:31884912-31885016
Coord A exon
chr6:31884891-31884911
Coord C2 exon
chr6:31884392-31884799
Length
21 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TTCCCCTCCTACCTCCACAGGAG
3' ss Score
11.36
Exon sequences
Seq C1 exon
GACAGTGGGGGGTGGACGCCCATCATCTGGGCTGCAGAGCACAAGCACATCGAGGTGATCCGCATGCTACTGACGCGGGGCGCCGACGTCACCCTCACTGACAAC
Seq A exon
GTGAGTGAGCGTTTGGTTGAG
Seq C2 exon
GAGGAGAACATCTGCCTGCACTGGGCCTCCTTCACGGGCAGCGCCGCCATCGCCGAAGTCCTTCTGAATGCGCGCTGTGACCTCCATGCTGTCAACTACCATGGGGACACCCCCCTGCACATCGCAGCTCGGGAGAGCTACCATGACTGCGTGCTGTGAGCCCCTGCCCCGCCCTTGATGCCCCTGCCCCCACTTCTTGCAGCCTCAGACCCTGCATTGGGCATCCTGTCCCCTCTTCAGGTTATTCCTGTCACGTGGGGCCAACCCTGAGCTGCGGAACAAAGAGGGGGACACAGCATGGGACCTGACTCCCGAGCGCTCCGACGTGTGGTTTGCGCTTCAACTCAACCGCAAGCTCCGACTTGGGGTGGGAAATCGGGCCATCCGCACAGAGAAGATCATCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204371-36-43,37-43-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.055
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.6=94.3),PF127962=Ank_2=PU(5.7=11.4)
A:
NA
C2:
PF127962=Ank_2=PD(19.1=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCACCCTCACTGACAAC
R:
GTTGACAGCATGGAGGTCACA
Band lengths:
117-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development