HsaALTD0002519-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000119402 | FBXW2
Description
F-box and WD repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:13608]
Coordinates
chr9:120787769-120793257:-
Coord C1 exon
chr9:120793149-120793257
Coord A exon
NA
Coord C2 exon
chr9:120787769-120788278
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AATATTTTGATGTGCCACAGGTA
3' ss Score
7.32
Exon sequences
Seq C1 exon
GCGCCATGGCTGCGGAGCGGACCCGGCCGCTGCAAGGCTCTGGCGGTCCGAGCGTGCCTAGTAGCTGTGAACCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
Seq A exon
NA
Seq C2 exon
GTAAATTTTTCCATAACCTTATGGAGAGAAAGGACTTTGAGACATGGCTTGATAACATTTCTGTTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGATCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTAGAGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGATCCTCAGACTTTACTCACATGCTGCCTCGTCTCTAAACAGTGGAATAAGGTGATAAGTGCCTGTACAGAGGTGTGGCAGACTGCATGTAAAAATTTGGGCTGGCAGATAGATGATTCTGTTCAGGACGCTTTGCACTGGAAGAAGGTTTATTTGAAGGCTATTTTGAGAATGAAGCAACTGGAGGACCATGAAGCCTTTGAAACCTCGTCATTAATTGGACACAGTGCCAGAGTGTATGCACTTTACTACAAAGATGGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119402-3-3,4-3,5-3,6-3-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCCTAGTAGCTGTGAACC
R:
AGTCTGAGGATCGAGCCATTT
Band lengths:
305-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains